Phenoflow: Standardise and share computable disease definitions
Worked as a part of HDR UK's National Phenomics Resource team to construct the UK's first national repository of computable disease definitions (phenotypes). Led on the development of Phenoflow, software that standardises repository phenotypes as Common Workflow Language (CWL) workflows.
Selected outputs
Publications
Connecting Computable Phenotypes With Multiple Health It Standards Using The Phenoflow Library 2022
M Chapman, L Rasmussen, J Pacheco and V Curcin
Phenoflow: A Microservice Architecture For Portable Workflow-Based Phenotype Definitions 2021
M Chapman, L V Rasmussen, J A Pacheco and V Curcin
Using Computable Phenotypes In Point-Of-Care Clinical Trial Recruitment 2021
M Chapman, J Domínguez, E Fairweather, B C Delaney and V Curcin
Software
phenoflow Standardise and share computable disease definitionsTalks
Phenoflow: An Architecture for Computable Phenotypes Applying FAIR principles to computable phenotype libraries, ELIXIR All Hands, Amsterdam, 2022Phenoflow 2021 Clinical Natural Language Processing Group, University of Edinburgh, 2021
Phenoflow: A Microservice Architecture for Portable Workflow-based Phenotype Definitions AMIA Informatics Summit, 2021
Using computable phenotypes in point of care clinical trial recruitment Medical Informatics Europe (MIE), 2021
