Experience

Current:  Lead NLP Software Engineer at Guy's and St Thomas' NHS Foundation Trust

Leading on and delivering the AI, software engineering and Dev/MLOps components of projects within the trust and across the NHS. Based in the AI Centre for Value-Based Healthcare.

2025 Visiting Lecturer at King's College London

2022 Lecturer (Assistant Professor) in Health Informatics at King's College London

Led funded research projects, developed software, conducted research, and taught as part of a tenured academic position focusing on the use of technology to support medical decision making.

2014 Researcher in Computer Science and Health Informatics at King's College London

Developed software and conducted research for projects focusing on the use of technology to support decision making.

2011 Teacher in Computer Science at King's College London

Taught computer science topics alongside my doctoral studies and research. Regularly presented to classes of 350+ students, and received teaching awards for student engagement and support.

Education

2016 Doctor of Philosophy (Ph.D.) in Computer Science at King's College London. 

Thesis: 'Cyber Hide-and-Seek'. Explored strategies for network attackers and defenders by simulating their behaviour within a multi-agent (artificial intelligence), distributed research platform. Supervised by Professor Peter McBurney and Professor Michael Luck.

2011 Bachelor of Science (BSc) in Computing at University of Liverpool. 

Honours project: 'Social networking and information diffusion in automated markets'. Explored the impact of social interactions on the performance of market traders by simulating their behaviour within a multi-agent, distributed research platform. Supervised by Professor Peter McBurney and Professor Katie Atkinson.

Grants

Using AI to understand how preventative interventions can improve the health of children in the UK and reduce winter pressures on the NHS 2023
HDR UK and the NIHR. GBP 54070.69

Improving the lives of stroke survivors with data 2022-2026
National Institute for Health and Care Research. GBP 2195908.0

REFLECT: Wearable sensors for personalised decision support 2021-2022
EPSRC (Impact Acceleration Award). GBP 55564.64

Selected publications

Generating Computable Phenotype Intersection Metadata Using The Phenoflow Library 2025
AMIA Joint Summits on Translational Science
M Chapman, L Rasmussen, J Pacheco, L Wiley and V Curcin

Long Covid Demographic And Secondary Care Referral Characteristics In Primary Care: Analysis Of Anonymised Primary Care Data From A Multiethnic, Deprived Urban Area In The Uk 2024
npj Primary Care Respiratory Medicine
M Chapman, S Durbaba, F Tydeman, M Friend, L Duly, J Moore, V Curcin, Y Wang, G Kaltsakas, T Chalder, N Hart and M Ashworth

Mechanisms For Integrating Real Data Into Search Game Simulations: An Application To Winter Health Service Pressures And Preventative Policies 2024
AMIA Joint Summits on Translational Science
M Chapman, A G-Medhin, K Daneshi, T Bramwell, S Durbaba, V Curcin, D Parmar, H Boulding, L Becares, C Morgan, M Molokhia, P McBurney, S Harding, I Wolfe, M Ashworth and L Poston

Ink: Non-Repudiation For Large Language Models (LLMs) In Healthcare 2024
AMIA Joint Summits on Translational Science
M Chapman, E Fairweather and C Hampson

Using Version Control Systems To Support High-Quality Phenotype Definitions 2023
AMIA Joint Summits on Translational Science
M Chapman, L V Rasmussen, J A Pacheco and V Curcin

Connecting Computable Phenotypes With Multiple Health It Standards Using The Phenoflow Library 2022
AMIA Clinical Informatics Conference
M Chapman, L V Rasmussen, J A Pacheco and V Curcin

Using Microservices To Design Patient-Facing Research Software 2022
Proceedings of the IEEE 18th International Conference on e-Science
M Chapman, A G-Medhin, I Sassoon, N KΓΆkciyan, E I Sklar and V Curcin

Phenoflow: A Microservice Architecture For Portable Workflow-Based Phenotype Definitions 2021
AMIA Joint Summits on Translational Science
M Chapman, L Rasmussen, J Pacheco and V Curcin

Covid-19 Analytics In Jupyter: Intuitive Provenance Integration Using Provit 2021
9th International Provenance and Annotation Workshop
M Chapman, E Fairweather and V Curcin

Using Computable Phenotypes In Point-Of-Care Clinical Trial Recruitment 2021
Digital Personalized Health and Medicine
M Chapman, J DomΓ­nguez, E Fairweather, B C Delaney and V Curcin

Desiderata For The Development Of Next-Generation Phenotype Libraries 2021
GigaScience
M Chapman, S Mumtaz, L Rasmussen, A Karwath, G V Gkoutos, D Thayer, J Pacheco, R Richesson, E Jefferson, S Denaxas and V Curcin

Computational Argumentation-Based Clinical Decision Support 2019
18th International Conference on Autonomous Agents and MultiAgent Systems
M Chapman, P Balatsoukas, M Ashworth, V Curcin, N KΓΆkciyan, K Essers, I Sassoon, S Modgil, S Parsons and E I Sklar

A Microservice Architecture For The Design Of Computer-Interpretable Guideline Processing Tools 2019
18th International Conference on Smart Technologies
M Chapman and V Curcin

Learning The Language Of Error 2015
13th International Conference on Automated Technology for Verification and Analysis
M Chapman, H Chockler, P Kesseli, D Kroening, O Strichman and M Tautschnig

Playing Hide-And-Seek: An Abstract Game For Cyber Security 2014
1st International Workshop on Agents and CyberSecurity
M Chapman, G Tyson, P McBurney, M Luck and S Parsons

Social Networking And Information Diffusion In Automated Markets 2012
Joint International Workshop on Trading Agent Design and Analysis
M Chapman, G Tyson, K Atkinson, M Luck and P McBurney

Software
hands  Run AI Search Game Hide-and-Seek simulations as a decision-support tool
consult  Modular decision-support system for chronic condition self-management
phenoflow  Standardise and share computable disease definitions
bert  BERT fine-tuning pipeline
reflect  Middleware for interacting with wearable devices
learning-errors  Abstractly represent software error traces as finite automata.
nr  Store data using different non-repudiation mechanisms, including a distributed ledger blockchain.
ohdsi  πŸ‹ OHDSI stack Docker configuration
jupyter  πŸ‹ JupyterHub Docker configuration
UI  User interface backend. Part of user-web-facing.
withings  Middleware for interacting with Withings Nokia Health devices.
ehr-fhir-converter  Convert arbitrary EHR extracts to FHIR.
tmrweb  Store clinical guidelines and determine their interactions.
social-traders  A plugin for the multi-market simulator JCAT, enabling social interaction between autonomous traders.
drg  Infrastructure for running a distributed HANDS research game.
l-star  A high-level Java-based implementation of the L learning algorithm.

Talks

GeNotes: Improving the accessibility and usability of genomic clinical guidelines for clinicians  Guy's and St Thomas' NHS Foundation Trust, London, 2026
Extracting Structured Data From Unstructured Clinical Documentation with LLM-based Tools: Genomic Biomarkers and Cancer History  Implementing AI in Genomics Masterclass, London, 2025
Phenoflow: An Architecture for FAIRer Phenotypes  The Northwestern University Clinical and Translational Sciences (NUCATS) Institute/Institute for Augmented Intelligence in Medicine (I.AIM)/Center for Health Information Partnerships (CHIP), Northwestern University, Chicago, 2025
Generating Computable Phenotype Intersection Metadata Using the Phenoflow Library  AMIA Informatics Summit, Pittsburgh, 2025 (presented by Professor Vasa Curcin)
Mechanisms for Integrating Real Data into Search Game Simulations: An Application to Winter Health Service Pressures and Preventative Policies  AMIA Informatics Summit, Boston, 2024
Technical Validation through Automated Testing  Computational Phenotyping and Software Engineering, AMIA Informatics Summit, Boston, 2024
Scalable architectures for phenotype libraries  Building (inter)national phenotype libraries, AMIA Annual Symposium, New Orleans, 2023
Using AI to understand how preventative interventions can improve the health of children in the UK and reduce winter pressures on the NHS.  Rethinking Poverty, Insecurity and the Cost of Living Crisis in the North West and Beyond, Liverpool, 2023
Using AI to understand how preventative interventions can improve the health of children in the UK and reduce winter pressures on the NHS  Health Foundation (All Analysts Series - Housing Conditions and Young People’s Health), London, 2023
Using AI to understand how preventative interventions can improve the health of children in the UK and reduce winter pressures on the NHS  HDR UK, London, 2023
Using Microservices to Design Patient-facing Research Software  IEEE 18th International Conference on e-Science, Salt Lake City, USA, 2022
Phenoflow: An Architecture for Computable Phenotypes  Applying FAIR principles to computable phenotype libraries, ELIXIR All Hands, Amsterdam, 2022
Phenoflow 2021  Clinical Natural Language Processing Group, University of Edinburgh, 2021
COVID-19 Analytics in Jupyter: Intuitive Provenance Integration using ProvIt  Provenance Week, 2021
Using computable phenotypes in point of care clinical trial recruitment  Medical Informatics Europe (MIE), 2021
Phenoflow: A Microservice Architecture for Portable Workflow-based Phenotype Definitions  AMIA Informatics Summit, 2021
MICRE: Microservices In MediCal Research Environments  King's Digital Lab, 2020
A Microservice Architecture for the Design of Computer-Interpretable Guideline Processing Tools  EUROCON, COHEAT, Novi Sad, Serbia, 2019
Martin Chapman: Research Overview, 2019  King's College London, 2019
Building a Blockchain POC for a major financial institution: the capabilities and limitations of existing technologies  Bitcoin and Blockchain Technologies Workshop, The University of Stirling, 2016
Martin Chapman: Research Overview, 2017  King's College London, 2017
Cyber Hide-And-Seek: Ph.D. Viva Presentation  King's College London, 2015
SocialTraders: A practical examples of agents.  Internal Research Seminar, King's College London, 2011.
Computational Search Games  Centre for Computational Finance and Economic Agents, The University of Essex, 2014.
Social Networking and Diffusion in Markets as demonstrated by the CAT platform  AAMAS, AMEC-TADA, Valencia, Spain, 2012
Abstractions for Network Security  Internal Research Seminar, King's College London, 2012.
Playing Hide-and-Seek: An Abstract Game for Cyber Security  AAMAS, ACYSE, Paris, France, 2014

Academic service

2012  Reviewer  European Conference on Multi-Agent Systems (EUMAS) 
2012 - 2018  Reviewer  The Knowledge Engineering Review (KER) 
2015  Reviewer  Computer-Aided Verification (CAV) 
2016 - 2018  Programme Comittee  Autonomous Agents and Multi-Agent Systems (AAMAS) 
2017 - 2025  Programme Comittee  Workshop on Trusted Smart Contracts (WTSC) 
2017 - 2021  Reviewer  Learning Health Systems 
2017  Reviewer  Digital Health 
2020 - 2024  Reviewer  AMIA Annual Symposium 
2020  Reviewer  AMIA Informatics Summit 
2022  Reviewer  Drug Safety 
2023 - 2024  Reviewer  Software and Systems Modelling 
2023  Reviewer  International Journal of Medical Informatics 
2023  Reviewer  Research Involvement and Engagement 
2024 - 2025  Programme Comittee  Artificial Intelligence in Medicine (AIME) 
2024  Reviewer  JAMIA Open 
2024  Reviewer  Global and Public Health 
2024  Reviewer  Journal of Healthcare Informatics Research 
2025  Reviewer  Discover Applied Sciences 

Languages

Python
HTML
JavaScript
Java

Procrastinations

not-so-naivecoin  Adding Bitcoin-like features to Naivecoin.
google-scholar-extended  nodejs module for listing profile information
coincoin  Illustrative cryptocurrency client and middleware.
world-cup-sweep  Office world cup sweep stake calculator.

© Martin Chapman

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